PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 320aa    MW: 35109.3 Da    PI: 5.6499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix941.5e-2948141185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++
  XP_009141327.1  48 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 141
                     8**********************97778888888******************************************************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-548113IPR009057Homeodomain-like
PROSITE profilePS500906.448114IPR017877Myb-like domain
PfamPF138374.2E-1348138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEQQLGLA VTAVDGDGNG NGNGGGGENS APSNEGGDDS VKTARLPRWT RQEILVLIQG  60
KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCRRHGVN RGPVQCRKRW SNLAGDYKKI  120
KEWESQVKEE TESYWVMRND VRRERKLPGF FDKEVYDVVD GGVVPPALAL GLAPAATSTS  180
VEPEGVLSEL ERREPAPNKL LQDVIDKEKQ AACGVDDQGR VKEKDAEAAN PEAGSTSQEA  240
RKRKRTSVSE DEEKEEEATK SMDNQLIQIL ERNGQLLAAQ LEVQNTNLKL DREQRKDHGD  300
NLVAVLSKLA DAVAKIADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141327.10.0PREDICTED: uncharacterized protein LOC103865277
SwissprotQ8VZ201e-169ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLM4DZB30.0M4DZB3_BRARP; Uncharacterized protein
STRINGBra021860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-146Trihelix family protein